A Modest New Year

Just wanted to drop a note of good-will and wish everyone–readers, non-readers, friends, enemies, ect…–a Happy New Year.

The next Modest Proposal issue will drop within the two weeks.  We’ve got a jam-packed slab of reviews, essays, original photos, stories, and the like.  Expect to have something to read at work.

Keep your head held high in these uncertain times.  Spend your money where it matters: support struggling musicians, buy DVDs from smaller labels, buy books from anybody (at this point, the publishing industry probably needs more of your dollars than the automotive industry).  Hell, don’t spend any money on new things and join the “rag-pickers” economy of free/thrift/used goods.  Even thrift stores need cash these days.

It seems like a pretty unanimous fact that we are working toward the government that we need/want, but don’t let that fool you.  Keep watching the skies, as they said 50 years ago, and monitor the actual deeds of those in power.  Hopefully 2009 will be the year that we actually learn from history (doubtful), but now might be a good time to go back and read of the mistakes of the past, from the fallacies of Rome through the supposed progress of the European Enlightenment to the high, heady days of Clinton and the dot-com boom.

But don’t worry too much.  Have fun!!!

Posted in Culture, December 2008 | Leave a comment

Probability and Evolution

Apparently the blog is working again!  Huzzah!

A recent paper in Nature Genetics shows that mutations in two genes tranform an annual plant (Arabidopsis thaliana) that normally grows a few centimeters, fruits, and senesces in a matter of weeks into a perennial – long-lived, large, bushy, and even woody!  Their findings are remarkable for a couple reasons.  First, crop breeders have been attempting for a long time to make perennial varieties of annual plants because they require less fertilizer and reduce soil erosion.  From an evolutionary perspective, these data suggest (not for the first time) that major ecological and morphological transitions can occur with relatively small genetic changes.  I emphasize that this is merely a suggestion because laboratory mutants are not necessarily good guides for what happens in nature.  For example, if a major mutation confers ‘woodiness’ but also causes a plant to be unattractive to pollinators, then any evolutionary paths involving that mutation cannot be driven by natural selection.  In contrast, this situation is not necessarily a barrier to breeders, which is why many suspect that derived mutations in crops may not resemble those in natural populations.

Annual and "Perennial" Arabidopsis

Annual and "Perennial" Arabidopsis

Studies like this prompt an unresolved problem in evolutionary genetics: does adaptation generally occur with few genetic changes of large effect or does it take many cumulative small changes?  A rarely discussed facet of this debate, as the title suggests, has to do with probability more than it does biology.  I’ll use a couple thought experiments to make my point.

Experiment I:

A bunch of populations face a new selective pressure.  Suppose there are two mutually exclusive genetic “routes” to the same “destination.” If route A is closer (requires fewer mutations) than route B from the starting point, then all else being equal, there will be more A populations than B populations.  In the limit, if B is infinitely long, then we will only see A.

Experiment II:

As before, a bunch of populations face a new selective pressure.  This time, there are two routes as before, A and B.  However, they are not equal.  A is closer to the starting point than B, but B is more fit, such that in competition between A and B, B will always win.  Now there is a trade-off.  A populations arise more rapidly, but are less permanent as they are replaced by B’s.

Returning to the original research paper.  Should we expect that when we sample natural populations that many have taken shorter, but perhaps less fit, routes to a new adaptive peak?  Or should we expect that all the more fit populations, once they have arisen, to have outcompeted the less fit ones?  I’m not really sure.  For one thing, there are many other complications I have omitted which bear upon the question.  Finally, I am reminded of Sir Ronald Fisher’s observation that:

Natural selection is a mechanism for generating an exceedingly high degree of improbability.

In the present context, it suggests that the power of natural selection is such that even very improbable (= very long) evolutionary routes will be most frequently observed.

Posted in Biology - Evolution, December 2008, Publishing | Leave a comment

Why the MP is better than everyone

GoodReads is a fairly excellent social networking site, as far as social networking sites go. It’s much closer to hanging out in an actual bookstore than visiting an online bookstore like Amazon, so that’s nice.

But it has the same faults as any other social network:

How can Twilight be both one of the “Best Books Ever” and “The worst books of all time?” Well, obviously, the clue lies in the distinction between “ever” and “all time.” And note that The Book of Mormon is another of the “Best Evers,” while Godless is another of the “Worst All Timers.”

AND THEN, note, that Twilight is also listed under “Best Young Adult Novels.” And just one Lois Lowry away from Harry Potter?!?!?! When everyone knows that child wizards are the devil’s tool for corrupting young minds, while the abstinent vampires are God’s tool for keeping young minds in a pure, boy-band-pitch tizzy.

Clearly, this GoodReads category system is flawed. These are NOT ACTUALLY the “best books ever,” nor are they the “worst books of all time.” What is a social networking site good for, then if not determining objective truth?

Thank Dumbledore the MP Journal is by invitation only. Long live the MP Journal.

PS: I invite you to befriend me, PetPetKate, on GoodReads.

Posted in Blogs, Culture, December 2008, Literature, Publishing, Religion | Leave a comment

The Museumatorium

I was in the DC Metropolitan region this weekend visiting my parents, and we decided to take a trip to the Smithsonian’s Museum of Natural History.  I hadn’t been there for ages and was pleasantly surprised at what I found.

A lot of the exhibits were the same ones I remember form my childhood, only now they were dotted with small signs explaining how our understanding has changed.  I think this must have been inspired by budgetary restraints (a few signs are cheaper than redoing your hall of dinosaurs), but it has the benefit of illustrating how science is constantly reevaluating and reexamining what we know.

The biggest change I noticed was the “Ocean Hall,” an enormous space (evocative of a convention center, almost) filled with display tanks, preserved specimens, and extensive exhibits about climate change and the importance of the oceans to terrestrial life.  I particularly liked the giant squid (sadly shrunken by its preservative fluids) and the full-size skeletons of modern and transitional whales hanging from the ceiling.

What I love about the museum is the almost casual way that such a staggering breadth of knowledge is displayed.  On my way to the insect zoo, I ducked into a nondescript door with the simple description “BONES.”  Inside were display cases packed with mounted skeletons – a group of marsupials, including a small platypus with poison spikes in full evidence, sat next to a group of apes.  Lemurs and tarsiers were around the corner, giving way to turtles, snakes, birds, dolphins, bison, an enormous Steller’s Sea Cow…and in the middle of it all was a plastic cylindrical bench, circa 1970, that wouldn’t have looked out of place in 2001: A Space Odyssey.  Cuvier, eat your heart out.

Posted in Culture, December 2008, Science, Uncategorized | Leave a comment

A Holiday Experiment

They’re the quintessential holiday food.  There’s even a song about it.  And although I’d never tasted them in my life, when I heard a short piece about chestnuts on local radio my mind managed to fill in the gaps with a completely fabricated sense memory of something vaguely nutty and pleasant.  This fictive flavor carried over as I watched Mark Bittman whip up a chestnut stir fry.  It looked amazing.   “That’s it, I’m buying some of these suckers.”

So last night I strolled into my local Ralph’s supermarket and made a beeline for the holiday nut assortment.  How does one choose chestnuts?  I tried squeezing them: they were surprisingly yielding.  I tried comparing their shapes and shine: there was nothing to distinguish them.  In the end I decided that mold was a bad sign, and chose twelve clean-looking examples more or less at random.

When I reached the checkout, I could see the cashier’s heart sink.  “Chestnuts?  <sigh>  Bill do you know the code for these?”  He didn’t.  It took a few tries, but the combined efforts of several cashiers resulted in $2.38 for Ralph’s, and twelve chestnuts for me.

One thing I did know about chestnuts is that they have to be cooked.  You can’t get them out of the shell unless they’re hot, and if you cook them and allow them to cool you’re back to square one.  Unfortunately, chestnuts also have a nasty tendency to explode when heated.  Hence the familiar x-shaped cut across one side of the nut — it’s not aesthetics; it’s a steam vent.

My roommate likes playing with knives, so I tasked him with making the x-shaped cuts.  After twenty minutes at 425ºF I had my very own roasted chestnuts.  The moment of truth: I peeled back the shell and pulled out a surprisingly squishy, brain-shaped nugget.

It was terrible.  Absolutely terrible.

I was crestfallen.  “Why don’t I like this!  I’m supposed to like this!  I want to like this!”  It tasted like sweetened mashed potatoes from a box, and not in a good way.  How could this have inspired the song?  What is Mark Bittman doing wasting his time on this crap?

I’m not one to give up easily, so this morning I decided that I must have prepared them incorrectly.  Maybe the squishiness meant I had undercooked them.  “Perhaps they’ll develop that complex, satisfying nutty flavor I’d imagined after a few more minutes in the oven.”  They didn’t.  I still had brain-shaped nuggets that tasted like sweetened mashed potatoes only now they weren’t squishy.

I have lost my chestnut innocence this holiday season, the adult equivalent of finding out the truth about Santa Claus.  Yet I have hope.  This entire episode parallels one from my very early childhood involving the second ingredient in Mark Bittman’s stir fry: shrimp.  At the tender age of four, I decided based solely on the appetizing picture on the side of a box of breadcrumbs that fried shrimp must be the most delicious thing in the world.  As with the chestnuts, I was sorely disappointed.  But twenty years later, and after a concerted effort, I love shrimp.  Will the same be true of chestnuts?  Ask me when I’m forty.

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Bridges to Somewhere

So, it’s heartening to see that people are now actively thinking of ways to make the country better now that we all hang on the precipice.  There are rumblings of the specifics of Obama’s infrastructural boom, have been anxious meetings about “ready to go” projects, and talk of re-training and re-aligning the labor of failing industries into ones that need help.

From the looks of things, it seems like we are about to have the biggest overhaul of state and federal highways since Roman times.  As anyone in virtually any part of the country can attest, rack and ruin have become part of the daily commute.  I’m glad that transportation (and transportation technologies) will finally greet the new millennium.

I did, however, have a bit of a humorous thought about it all (when we lose this ability to laugh at our collective misfortunes, Mordor has truly won).  What would happen if, like, pretty much every route you take were suddenly under repair at the same time?  Can we expect constant gridlock because of daytime construction for the next four years?  What would happen if all of the bridges leading into and out of an area were simultaneously under repair…would island cities and towns suddenly suffer because their bridges were becoming too awesome?  Will we have to come up with a name for people who take part in this massive source of jobs?  Will we call them “roadies”?  What will we call the old “roadies”?

It will be interesting to see how these multitudes of labor tackle problems over the next few years.  I foresee a year or two of millions of highway repair jobs, followed by a year of millions of people laying fiber optic cables, followed by a year of making the USA the call-center capital of the world.  But what will happen when someone from Bangladesh complains about the accident of the person from Mobile, Alabama who fields their call?

Posted in Uncategorized | 1 Comment

There’s nothing wrong with being an elitist

Firstly, apologies for neglecting to post last week.  I think that’s two I’ve missed in the past month, but I had a rather busy Thanksgiving.

I want to talk a little about this article in Sunday’s Washington Post, about how some people are criticizing President-elect Obama for bringing in so many people who are products of major universities. I could – with some effort – understand why one would be uneasy about bringing a lot of career academics into government. I think the idea of the ivory tower is an exaggeration, but one could argue that a lifetime spent in academia is not a good preparation for politics.  But the criticisms in this article seem to be focused simply on the fact that these appointees graduated from good schools – that somehow because they’re smart and come from outstanding institutions, they can’t be trusted. What absolute idiocy.

The Ivy-laced network taking hold in Washington is drawing scorn from many conservatives, who have in recent decades decried the leftward drift of academia and cast themselves as defenders of regular Americans against highbrow snobbery

Elitism is a good thing! Our leaders should be smarter than us; if not, one has to question in what way they are qualified to be leaders. Not everyone who comes out of the Ivy League is automatically brilliant, as sadly evidenced by Mr. Bush, and we must remember that even so venerable an institution as Oxford sometimes drops the ball. Why, Cambridge even let our esteemed editor-in-chief hang around for a summer term, so one can conclude that their standards have dropped a tad. Still, the fact that “dozens of [Bush] administration members hail from Regent University, founded by Pat Robertson,” should make us shudder. I humbly suggest that a degree from Regent University qualifies the holder for absolutely nothing, and could possibly be regarded as a sign of mental instability.

The article does raise a good point – JFK’s “best and brightest” led the United States into Vietnam. Intelligence is not the same as infallibility. In this particular instance, one might reasonably conclude that the US would have ended up in Vietnam anyway – if Nixon had defeated Kennedy, it’s hard to imagine him staying out. It doesn’t really matter. The Obama administration will make mistakes. Undoubtedly. I hope they will not be as disastrous as the Vietnam War – or the Iraq War. The fact remains that we should be thrilled that the US will be in the hands of generally intelligent people, rather than those who regard ignorance as a virtue.

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The Joys of Getting a Good Deal, Part II

(Part I is here)

There is a used book store here in Bloomington that has piqued my interest for some time.  Located on the main square, Caveat Emptor has the appearance of one of those tucked away and little known retail treasures that probably hasn’t changed anything but it’s inventory in 30 years.  The owner, seemingly in his 60’s, was a bit surly with me when I entered carrying an unfinished Macchiato.  ”You’ll have to leave that up here with me!” he said.  I was really looking forward to a leisurely perusal of the shelves while sipping a hot drink to fortify me against the early winter cold.  It wasn’t meant to be.  I finished my drink outside while I stopped by the ATM  (it occurred to me a used book store like this might now take credit).

Being a university town, I reasoned that a used book store might have picked up some all-too-hard-to-find scholarly classics from various emeritus professors or long-departed grad students.  When I came back into the store, I headed straight back to the biology section – a small, windowless room that was clearly a modified office or closet.  As if I’d had a search image for them, my eyes immediately fixed on the opposite side of the room, where a lower shelf marked “Botany” contained two excellent books that are all but required reading for people in my sub-sub-sub-field (or something like that).  The first was a 1986 volume on the Solanaceae plant family, edited by taxonomist William D’Arcy’s.  New copies can still be found for $197. 

The second was an out of print book by a still living professor at University of Texas, Verne Grant.  His research focused on the origin of new plant species, with particular focus (I think) on the role of pollinators and suite of floral traits, known as pollination syndromes, that evolve in response to novel pollinators.  I picked the second edition of his treatise on the subject, which was published in 1981.

It will be a little while before I get to read these, though I expect they will turn out to be invaluable resources and a nice summary of what was known by the time they were written.  On my way out, I mentioned to the owner that I’d be back, especially if he managed to round up some more bargains like those I found today.

Posted in Biology - Evolution, Books, December 2008 | Leave a comment

The Rise of the T-Shirt Economy

Clive Thompson has a fascinating little piece on the interconnection of online content and t-shirts in this month’s Wired magazine.  We all know that most of the bottom (i.e. money) dropped out of the internet a while ago.  Many sites that once vied for cashflow from online content have since gone extinct.  Thompson describes some websites–and some shirt providers– that manage to stay afloat by regarding t-shirt sales as crucial, ancillary revenue.  For example, popular machinima site Red vs. Blue cannot charge for its videos and maintain a massive fan base, so it has to count on roughly 10% of fans eventually ponying-up for merchandise.  In this case, the money to be made online is not disembodied and non-corporeal, but rather all about providing a service that works directly for (on) bodies.

This seems like nothing new, right?  Well, I wanted to mention it because it has interesting ramifications for our current economic situation.  In a sense, this shift implies something that some people have always known about capitalism: that when you buy something, you are buying a thing (on one level), but on another level, you are actually buying (intentionally or not) something else, perhaps even something entirely different.  Who wants to eliminate the confusion and simply switch over to a t-shirt barter economy?  I know I do!

Further, this trend brings up something that bothers me about Web 2.0 mindsets in general.  Right, right, I know that part of the ethos of Web 2.0 is to democratize everything and to let people do and publish what is on their mind.  But with sites like Threadless and with a culture based on t-shirt advertising, companies have paradoxically further privatized themselves by public-izing their workloads.  What Threadless and other shirt-design websites do is farm most of their labor out to their audiences, who they in turn “pay” far less than a traditional employee to keep them (the company) in business.  This is one of the wet-dreams of flexible, decentralized labor: why own the cow when you can pay some chump a bit for his ideas, time, and intellectual property and get the “milk” for free?  What business models like this show is that the barrier between successful companies and Joe-24-pack-creative-laborer is capital for overhead and distribution.

Moreover, I find this t-shirt culture of the internet to be problematic because it exposes how ineffective online advertising actually is.  Promoting websites cannot stay on the web…rather, the human body, outside of virtual space, should act as a more effective billboard.  Plus, since “we” (website) are providing a “service” (shirt), they should have to pay to work for us!  The virtual yields to the “real.”  The internet corrects its failures by retreating offline.

Of course, I am guilty of this.  I write for a website that has sold t-shirts.  I have purchased shirts that have been made via “exploitative” (in an economic sense, yes, in a figurative sense, not really) labor.  I wear all sorts of shirts!  But my point is, resilient businesses and economic structures–even nice, homegrown and honest-to-entrepreneured websites–will cope with bad cashflow by having you do lots of their work for them.  Participate if you want (shirt design and the conversations that come with such shirts can be fun), but bear in mind that you become implcated in the process.  On the one hand, it is probably better to support niche things you care about by spending money on them when you can.  But be careful: if IBM announces a t-shirt design contest with a $500 purse, run for the hills.  Otherwise, you’ll be a shill.

Posted in Culture, Economics, November 2008, October 2008, September 2008 | 1 Comment

Our Terrifying Future (or not)

This is an interesting report. According to the National Intelligence Council, US influence in world affairs will most likely decline in the coming decades. This isn’t terribly earth-shattering; history is rife with examples of failed empires (the Dutch and Portuguese, to name two). I am somewhat surprised that it’s being admitted so frankly at such a high level. It should also be noted that the report doesn’t predict a collapse of US power (a la the UK), but rather the emergence of a multi-polar global system. The report also mentions the increased possibility of resource-based conflicts in the future.

So will we soon have to roam the highways, slugging it out for the precious guzzle-line and clean water? According to Daniel Henninger at the Wall Street Journal, the answer is yes. The reason? Atheists. So…sorry about that lads.  Totally didn’t see that coming.  Still – there almost certainly isn’t a god, so you might as well get a dog, supercharge your car, and tear the arm off your leather jacket.

Posted in Culture, November 2008, Politics, Uncategorized | Leave a comment